Strain & Genotype Data Description


SS.BN-(D13Mgh13-D13Mit4)/Mcwi

Genetic characteristics of the SS.BN-(D13Mgh13-D13Mit4)/Mcwi congenic strain studied.
Presented are the data from a total genome scan performed at a 20 cM interval. Chromosomes are shown in the first column. Genetic marker used are shown in the second column. The last 2 columns display control DNA from BN and SS rats. Other columns display the results for DNA from individual progenitors of the animals used by the Phenotyping Core.Animals phenotyped were genotyped with the markers showing some contamination. These are given on the detail page.
Table Legend:
BN: parental control DNA
SS: parental control DNA
HET: F1 Heterozygous DNA (from female)
1: Genotyping score given to BN homozygous markers
2: Genotyping score given to SS homozygous markers
3: Genotyping score given to heterozygous markers
-: Genotype missing

CHR

MARKER NAME

A

24_1

32_2

25_7

27_6

28_10

36_4

39_1

47_4

39_2

39_3

39_4

45_1

45_2

46_5

47_1

47_2

47_5

47_6

BN

SS

1d1rat167222222222222222222212
1d1rat23422222222222222222-212
1d1rat265222222222222222222212
1d1rat47222222222222222222212
1d1rat73222222222222222222212
1d1rat8922222222222222222-212
2d2rat114222222222222222222212
2d2rat14222222222222222222212
2d2mit35222222222222222222212
2d2rat1492222222222-2222222212
2d2rat65222222222222222222212
3d3mgh8222222222222222222212
3d3rat189222222222222222222212
3d3rat86222222222222222222212
3d3rat2172222222222222-2222212
3d3rat1222222222222222222212
4d4rat222222222222222222-212
4d4rat1433323333333133133-212
4d4rat7532221111111311311-112
4d4rat202222222222222222222212
5d5mgh1222222222222222222212
5d5mit5222222222222222222212
5d5rat8422222222222222222-212
5d5rat16222222222222222222212
5d5rat88222222222222222222212
5d5rat3322222222222222222-212
5d5rat50222222222222222222212
6d6rat67222222222222222222212
6d6rat9632223332232222232-312
6d6rat98222222222222222222212
6d6mgh9222222222222222222212
6d6rat75222222222222222222212
7d7rat11322222222222222222-212
7d7rat8322222222222222222-212
7d7rat14222222222222222222212
7d7rat94222222222222222222212
8d8rat5622222222222222222-212
8d8mit222222222222222222-212
8d8rat3022222222222222222-212
8d8rat7222222222222222222-212
9d9rat88222222222222222222212
9d9rat3022222222222222222-212
9d9rat98222-2--2222222--2--12
9d9rat5222222222222222222212
9d9rat10833312332233323231-112
10d10rat9623323332233323322-212
10d10rat113233232222233223222212
10d10rat73133213333331111322212
10d10rat107222222222222222222212
10d10mgh4222222222222222222212
10d10rat135222222222222222222212
11d11rat322--222222222222-2-212
11d11mit422222222222-222-2-212
11d11rat762--222222222222222212
11d11rat222222-2222222222222212
12d12rat922222222222222222-212
12d12rat4922222222222222222-212
12d12arb1322222222222222222-212
13d13mgh1311111111111111111-112
13d13rat88111111111111111111112
13d13rat33111111111111111111112
13d13rat19223332332233333222-212
14d14rat1222222222222222222212
14d14mit322222222222222222-212
14d14rat2122222222222222222-212
14d14rat9422222222222222222-212
15d15mit222222222222222222-212
15d15rat1322222222222222222-212
15d15mgh522222222222222222-21-
15d15rat2922222222222222222-21-
16d16rat2122222222222222222-212
16d16rat8222222222222222222212
16d16rat72222222222222222222212
17d17rat5323312333333232233-312
17d17rat11222222222222222222212
17d17rat36222222222222222222212
17d17rat52222222222222222222212
18d18rat852--222222222222222212
18d18rat27222222222222222222212
18d18mit1322222222222222222---2
19d19rat3222222222222222222-212
19d19rat25222-2222222222222-212
19d19mit222222222222222222-212
19d19rat60222222222222222222-12
20d20mgh122222222222222222-212
20d20mgh52--222222222222222212
20d20rat1222222222222222222212
20d20rat10222222222222222222212