Strain & Genotype Data Description


SS.BN-(D12arb13-D12rat79)/Mcwi

Genetic characteristics of the SS.BN(D12arb13-D12rat79)/Mcwi congenic strain studied.
Presented are the data from a total genome scan performed at a 20 cM interval. Chromosomes are shown in the first column. Genetic markers used are shown in the second column. The last 3 columns displays control DNA from BN, SS and het rats. Other columns display the results for DNA from individual progenitors of the animals used by the Phenotyping Core.
Table Legend:
BN: parental control DNA
SS: parental control DNA
HET: F1 Heterozygous DNA (from female)
1: Genotyping score given to BN homozygous markers
2: Genotyping score given to SS homozygous markers
3: Genotyping score given to heterozygous markers
-: Genotype missing

CHR

MARKER NAME

943_4

943_2

2453_5

2257_3

2136_4

1783_13

1783_11

1781_7

BN

SS

HET

1d1rat16722222222123
1d1rat23422222222123
1d1rat26522222222123
1d1rat4722222222123
1d1rat7322222222123
1d1rat8922222222123
2d2rat11422222222123
2d2rat1422222222123
2d2mit3522-2--2-123
2d2rat14922222222123
2d2rat6522222222123
3d3mgh822222222123
3d3rat18922222222123
3d3rat8622222222123
3d3rat217-2222--2-23
3d3rat122222222123
4d4rat222222222123
4d4rat14----2--2123
4d4rat7522222222123
4d4rat20222222222123
5d5mgh122222222123
5d5mit522222222123
5d5rat842222-222123
5d5rat1622222222123
5d5rat8822222222123
5d5rat332222-2-2123
5d5rat5022222222123
6d6rat6722222222123
6d6rat9622222222123
6d6rat9822222222123
6d6mgh922222222123
6d6rat7522222222123
7d7rat11322222222123
7d7rat8322222222123
7d7rat1422222222123
7d7rat9422222222123
8d8rat5622222222123
8d8mit222222222123
8d8rat3022222222123
8d8rat8122222222123
9d9rat8822222222123
9d9rat3022222222123
9d9rat9822222222123
9d9rat522222222123
9d9rat10822222--2123
10d10rat9622222222123
10d10rat11322222222123
10d10rat7322222222123
10d10rat10722222222123
10d10mgh422222222123
10d10rat13522222222123
11d11rat3222222222123
11d11mit42--2----123
11d11rat7622222222123
11d11rat2222222222123
12d12arb131111-111123
12d12rat911111111123
12d12rat4922222222123
13d13mgh1322222222123
13d13rat8822222222123
13d13rat3322222222123
13d13rat19222222222123
14d14rat122222222123
14d14mit322222-22123
14d14rat2122222-22123
14d14rat9422222222123
15d15mit222222222123
15d15rat1322222222123
15d15mgh522222222123
15d15rat2922222222123
16d16rat2122222222123
16d16rat822222222123
16d16rat7222222222123
16d16rat1422222222123
17d17rat5322222222123
17d17rat1122222222123
17d17rat36--2--222123
17d17rat5222222222123
18d18rat1722222222123
18d18rat8522222222123
18d18rat2722222222123
18d18mit1322222222123
19d19rat3222222222123
19d19rat2522222222123
19d19mit2222-2---123
19d19rat6022222222123
20d20rat122222222123
20d20mgh522222222123
20d20rat1022222222123
20d20mgh122222222123