Strain & Genotype Data Description


SS-9BN/Mcwi

Genetic characteristics of the SS-9BN/Mcwi consomic strains studied.
Presented are the data from a total genome scan performed at a 20 cM interval. Chromosomes are shown in the first column. Genetic marker used are shown in the second column. The last column displays control DNA from heterozygous rats. Other columns display the results for DNA from individual progenitors of the animals used by the Phenotyping Core and sent to CRL for distribution.
Table Legend:
Table Legend:
BN: parental control DNA
SS: parental control DNA
HET: F1 Heterozygous DNA (from female)
1: Genotyping score given to BN homozygous markers
2: Genotyping score given to SS homozygous markers
3: Genotyping score given to heterozygous markers
-: Genotype missing

CHR

MARKER NAME

1780_1

1780_2

1780_3

1780_4

1780_5

1780_6

1780_7

1780_8

212_8

216_4

2467_2

2467_4

SSHET

1d1rat1672222222222223
1d1rat2342222222222223
1d1rat2652222222222223
1d1rat472222222222223
1d1rat732222222222223
1d1rat892222222222223
2d2rat1142222222222223
2d2rat142222222222222
2d2mit352222222222223
2d2rat1492222222222223
2d2rat652222222222223
3d3mgh82222222222223
3d3rat1892222222222223
3d3rat862222222222223
3d3rat2172222222222223
3d3rat12222222222223
4d4rat22222222222223
4d4rat142222222222223
4d4rat752222222222223
4d4rat562222222222223
4d4rat2022222222222223
5d5mgh1222222222-223
5d5rat842222222222223
5d5rat162222222222223
5d5rat882222222222223
5d5mit52222222222223
5d5rat332222222222223
5d5rat502222222222223
6d6rat672222222222223
6d6rat962222222222223
6d6rat982222222222223
6d6mgh92222222222223
6d6rat752222222222223
7d7rat1132222222222223
7d7rat832222222222223
7d7rat142222222222223
7d7rat942222222222223
8d8rat562222222222223
8d8mit22222222222223
8d8rat302222222222223
8d8rat812222222222223
9d9rat881111111111113
9d9rat301111111111113
9d9rat981111111111113
9d9rat51111111111113
9d9rat1081111111111113
10d10rat962222222222223
10d10rat11322222222--223
10d10rat732222222222223
10d10rat1072222222222223
10d10mgh42222222222223
10d10rat1352222222222223
11d11rat322222222222223
11d11mit42222222222223
11d11rat7622-2222222223
11d11rat222222222222223
12d12arb13222222222222-
12d12rat92222222222223
12d12rat492222222222223
13d13mgh132222222222223
13d13rat882222222222223
13d13rat332222222222223
13d13rat1922222222222223
14d14rat12222222222223
14d14mit32222222222223
14d14rat212222222222223
14d14rat942222222222223
15d15mit22222222222223
15d15rat132222222222223
15d15mgh52222222222223
15d15rat292222222222223
16d16rat212222222222223
16d16rat82222222222223
16d16rat722222222222223
16d16rat142222222222223
17d17rat532222222222223
17d17rat112222222222223
17d17rat362222222222223
17d17rat522222222222223
18d18rat172222222222223
18d18rat852222222222223
18d18rat272222222222223
18d18mit132222222222223
19d19rat322222222222223
19d19rat252222222222223
19d19mit22222222222223
19d19rat602222222222223
20d20rat12222222222223
20d20mgh522222222--223
20d20rat1022222222--223
20d20mgh122-2222222223