Strain & Genotype Data Description


SS-7BN/Mcwi

Genetic characteristics of the SS-7BN consomic strains studied.
Presented are the data from a total genome scan performed at a 20 cM interval. Chromosomes are shown in the first column. Genetic markers used are shown in the second column. The last column displays control DNA from het rats. Other columns display the results for DNA from individual progenitors of the animals phenotyped and sent to CRL for distribution.
Table Legend:
BN: parental control DNA
SS: parental control DNA
HET: F1 Heterozygous DNA (from female)
1: Genotyping score given to BN homozygous markers
2: Genotyping score given to SS homozygous markers
3: Genotyping score given to heterozygous markers
-: Genotype missing

CHR

MARKER NAME

8253_2

8253_3

8257_2

8257_4

8262_4

8262_5

8262_7

8267_2

8267_3

8267_4

8267_5

8267_6

8267_9

8731_1

8731_3

8731_5

8731_12

SSHet

1d1rat167222222222222222223
1d1rat234222222222222-22223
1d1rat265222222222222222223
1d1rat47222222222-22222223
1d1rat73222222222222222223
1d1rat89222222222222222223
2d2rat114222222222222222223
2d2rat14222222222222222223
2d2rat2022222222-222222223
2d2mit35222222222222222223
2d2rat149222222222222222223
2d2rat65-22222222222222223
3d3mgh8222222222222222223
3d3rat189222222222222222223
3d3rat86222222222222222223
3d3rat217222222222222222223
3d3rat1222222222222222223
4d4rat2222222222222222223
4d4rat14222222222222222223
4d4rat75222222222222222223
4d4rat56222222222222222223
4d4rat112222222222222222223
5d5mgh1222222222222-22223
5d5rat84222222222222222223
5d5rat88222222222222222223
5d5mit5222222222222222223
5d5rat33222222222222222223
5d5rat50222222222222222223
6d6rat67222222222222222223
6d6rat962222222-2222222223
6d6rat13422222222222222222-
6d6rat98222222222222222223
6d6mgh922222222-22-------
6d6rat75222-2-2222-2222223
7d7rat11311111111111111111-
7d7rat83111-1-111111111113
7d7rat14111111111111111113
7d7rat94111111111111111113
8d8rat56222222222222-22223
8d8mit2222222222222222223
8d8rat3022222222---22-----
8d8rat81222-22-22222222223
9d9rat88222222222222222223
9d9rat30222222222222222223
9d9rat98222222222222222223
9d9rat5222222222222222223
9d9rat1082222-2222222222223
10d10rat9622-222222222222223
10d10rat73222222222222222223
10d10rat107222222222222-22223
10d10mgh4222222222222222223
10d10rat135222222222222222223
11d11rat322222222222-2222223
11d11rat342222222-22-2---223
11d11rat76222222222222222223
11d11rat22222222222222222223
12d12arb13222222222222---223
12d12rat9222-22222222222223
12d12rat79222222222222222223
12d12rat492222222222222--223
13d13mgh13222222222222222223
13d13rat88222222222222---223
13d13rat332222222222222--223
13d13rat192222222222222---223
14d14rat48222222222222222223
14d14rat21-222-2-22222-----3
14d14rat94222222222222222223
15d15mit2222-2222222-------
15d15rat13222222222222222223
15d15mgh5222222222222222223
15d15rat29-222-22222222--223
16d16rat21-22222222222222223
16d16rat8222222222222222223
16d16rat72-222222222-2222223
16d16rat14-22222222--222222-
17d17rat53-2-222-22--222222-
17d17rat11222222222222222223
17d17rat362222222222-2222223
17d17rat52-2-222--2--222222-
18d18rat17-222222222222--223
18d18rat50222222222-22222223
18d18rat101222222222222222223
18d18mit13222222222222222223
19d19rat32222222222222222223
19d19rat25222222222222222223
19d19mit2-222222-2-22222223
19d19rat6022222222222-222223
20d20rat46222222222222222223
20d20mgh5222222222222222223
20d20rat10222222222222222223
20d20mgh1222222222222222223
21dxrat49-22-22222-22222221
21dxmgh8222222222222222221
21dxrat66222222222222222221
21dxrat104-22222222-22222221