Strain & Genotype Data Description


SS-5BN/Mcwi

Genetic characteristics of the SS-5BN consomic strains studied.
Presented are the data from a total genome scan performed at a 20 cM interval. Genetic markers used are shown in the first column. The last columns display SS, and BN control DNA. Other columns display the results for DNA from individual progenitors of the animals phenotyped and sent to CRL for distribution.
Table Legend:
BN: parental control DNA
SS: parental control DNA
HET: F1 Heterozygous DNA (from female)
1: Genotyping score given to BN homozygous markers
2: Genotyping score given to SS homozygous markers
3: Genotyping score given to heterozygous markers
-: Genotype missing

CHR

MARKER NAME

16081_2

16081_6

16081_8

18106_2

19731_2

19731_3

20904_1

BN

SS

1d1rat167222222212
1d1rat2342222222-2
1d1rat265222222212
1d1rat47222222212
1d1rat73222222212
1d1rat89222222212
2d2rat114222222-12
2d2rat14222222212
2d2rat20222222212
2d2mit35222222212
2d2rat149222222212
2d2rat652222222-2
3d3mgh8222222212
3d3rat189222222212
3d3rat86222222212
3d3rat217222222212
3d3rat1222222212
4d4rat2222222212
4d4rat142222222-2
4d4rat75222222212
4d4rat562222222-2
4d4rat1122222222-2
5d5mgh1111111112
5d5rat84111111112
5d5rat88111111112
5d5mit5111111112
5d5rat33111111112
5d5rat50111111112
6d6rat67222222212
6d6rat96222222212
6d6rat13422222221-
6d6rat98222222212
6d6mgh922222221-
6d6rat75222222212
7d7rat11322222221-
7d7rat83222222212
7d7rat1422222221-
7d7rat94222222212
8d8rat56222222212
8d8mit2222222212
8d8rat30222222212
8d8rat81222222212
9d9rat882222222-2
9d9rat30222222212
9d9rat98222222212
9d9rat42222222--
9d9rat108222222212
10d10rat96222222212
10d10rat73222222212
10d10rat107222222212
10d10mgh4222222212
10d10rat105222222212
11d11rat32222222212
11d11rat34222222212
11d11rat762222222--
11d11rat22222222212
12d12arb13222222212
12d12rat9222222212
12d12rat79222222212
12d12rat49222222212
13d13mgh13---------
13d13rat88222222212
13d13rat33222222212
13d13rat192222222212
14d14rat24222222212
14d14rat10---------
14d14rat212222222-2
14d14rat94222222212
15d15mit2222222212
15d15rat13222222212
15d15mgh5222222212
15d15rat29222222212
16d16rat21222222212
16d16rat8222222212
16d16rat72222222212
16d16rat14222222212
17d17rat53222222212
17d17rat11222222212
17d17rat36222222212
17d17rat52222222212
18d18rat17222222212
18d18rat50222222212
18d18rat101222222212
18d18mit13222222212
19d19rat32222222212
19d19rat35222222212
19d19mit2222222212
19d19rat60222222212
20d20rat1222222212
20d20mgh5222222212
20d20rat10222222212
20d20mgh1222222212
21dxrat4922222221-
21dxmgh8222222212
21dxrat66222222212
21dxrat104222222212