Strain & Genotype Data Description


SS-3BN/Mcwi

Genetic characteristics of the SS-3BN consomic strains studied.
Presented are the data from a total genome scan performed at a 20 cM interval. Genetic markers used are shown in the first column. The last columns display SS, and BN control DNA. Other columns display the results for DNA from individual progenitors of the animals phenotyped and sent to CRL for distribution.
Table Legend:
BN: parental control DNA
SS: parental control DNA
HET: F1 Heterozygous DNA (from female)
1: Genotyping score given to BN homozygous markers
2: Genotyping score given to SS homozygous markers
3: Genotyping score given to heterozygous markers
-: Genotype missing

CHR

MARKER NAME

21101_2

21101_5

21101_6

21101_8

21101_9

21101_10

21789_3

21789_4

22266_1

22266_2

22266_4

BN

SS

1d1rat1672222222222212
1d1rat2342222222222212
1d1rat2652222222222212
1d1rat472222222222212
1d1rat732222222222212
1d1rat892222222222212
2d2rat1142222222222212
2d2rat142222222222212
2d2rat202222222222212
2d2mit352222222222212
2d2rat1492222222222212
2d2rat652222222222212
3d3mgh81111111111112
3d3rat1891111111111112
3d3rat861111111111112
3d3rat217111111--11112
3d3rat11111111111112
4d4rat22222222222212
4d4rat142222222222212
4d4rat752222222222212
4d4rat562222222222212
4d4rat1122222222222212
5d5mgh12222222222212
5d5rat842222222222212
5d5rat882222222222212
5d5mit52222222222212
5d5rat332222222222212
5d5rat502222222222212
6d6rat672222222222212
6d6rat962222222222212
6d6rat1342222222222212
6d6rat982222222222212
6d6mgh92222222222212
6d6rat752222222222212
7d7rat1132222222222212
7d7rat832222222222212
7d7rat142222222222212
7d7rat942222222222212
8d8rat562222222222212
8d8mit222--222222212
8d8rat302222222222212
8d8rat812222222222212
9d9rat882222222222212
9d9rat302222222222212
9d9rat982222222222212
9d9rat42222222222212
9d9rat1082222222222212
10d10rat962222222222212
10d10rat732222222222212
10d10rat1072222222222212
10d10mgh42222222222212
10d10rat1052222222222212
11d11rat322222222222212
11d11rat342222222222212
11d11rat762222222222212
11d11rat222222222222212
12d12arb132222222222212
12d12rat92222222222212
12d12rat792222222222212
12d12rat492222222222212
13d13mgh13-------------
13d13rat882222222222212
13d13rat332222222222212
13d13rat1922222222222212
14d14rat242222222222212
14d14rat10------2222212
14d14rat212222--2222212
14d14rat942222222222212
15d15mit22222222222212
15d15rat132222222222212
15d15mgh52222222222212
15d15rat292222222222212
16d16rat212222222222212
16d16rat82222222222212
16d16rat722222222222212
16d16rat142222222222212
17d17rat532222222222212
17d17rat112222222222212
17d17rat362222222222212
17d17rat522222222222212
18d18rat172222222222212
18d18rat502222222222212
18d18rat1012222222222212
18d18mit132222222222212
19d19rat322222222222212
19d19rat352222222222212
19d19mit22222222222212
19d19rat602222222222212
20d20rat12222222222212
20d20mgh52222222222212
20d20rat102222222222212
20d20mgh12222222222212
21dxrat492222222222212
21dxmgh82222222222212
21dxrat662222222222212
21dxrat1042222222222212