Strain & Genotype Data Description


SS-18BN/Mcwi

Genetic characteristics of the SS-18BN/Mcwi consomic strains studied.
Presented are the data from a total genome scan performed at a 20 cM interval. Chromosomes are shown in the first column. Genetic marker used are shown in the second column. The last 2 columns display control DNA from BN and SS rats. Other columns display the results for DNA from individual progenitors of the animals used by the Phenotyping Core.Animals phenotyped were genotyped with the markers showing some contamination. These are given on the detail page.
Table Legend:
BN: parental control DNA
SS:parental control DNA
HET: F1 Heterozygous DNA (from female)
1: Genotyping score given to BN homozygous markers
2: Genotyping score given to SS homozygous markers
3: Genotyping score given to heterozygous markers
-: Genotype missing

CHR

MARKER NAME

67_2

68_2

71_1

71_2

71_3

74_5

74_8

74_9

75_3

75_5

886_1

886_6

886_4

886_7

886_8

886_9

BN

SS

1d1rat167222222222222222212
1d1rat234222222222222222212
1d1rat265222222222222222212
1d1rat47222222222222222212
1d1rat73222222222222222212
1d1rat892222222222222-2212
2d2rat114222222222222222212
2d2rat14222222222222222212
2d2mit35222222222222222212
2d2rat149222222222222222212
2d2rat65222222222222222212
3d3mgh8222222222222222212
3d3rat189222222222222222212
3d3rat86222222222222222212
3d3rat217222222222222222212
3d3rat1222222222222222212
4d4rat2222222222222222212
4d4rat14222222222222222212
4d4rat75222222222222222212
4d4rat202222222222222222212
5d5mgh1222222222222222212
5d5mit5222222222222222212
5d5rat84222222222222222212
5d5rat16222222222222222212
5d5rat88222222222222222212
5d5rat33222222222222222212
5d5rat50222222222222222212
6d6rat67222222222222222212
6d6rat96222222222222222212
6d6rat98222222222222222212
6d6mgh9222222222222222212
6d6rat75222222222222222212
7d7rat113222222222222222212
7d7rat83222222222222222212
7d7rat14222222222222222212
7d7rat94222222222222222212
8d8rat56222222222222222212
8d8mit2222222222222222212
8d8rat30222222222222222212
8d8rat72222222222222222212
9d9rat88222222222222222212
9d9rat30222222222222222212
9d9rat982-22222222222-2212
9d9rat5222222222222222212
9d9rat108222222222222222212
10d10rat96222222222222222212
10d10rat113222222222222222212
10d10rat73222222222222222212
10d10rat107222222222222222212
10d10mgh4222222222222222212
10d10rat1352222222222-2222212
11d11rat32222222-22222222212
11d11mit42-2222222222222212
11d11rat76222222222222222212
11d11rat22222222222222222212
12d12rat9222222222222222212
12d12rat49222222222222222212
12d12arb13222222222222222212
13d13mgh132222222222-2222212
13d13rat88222222-22222222212
13d13rat33222222222222222212
13d13rat192222222222222222312
14d14rat1222222222222222212
14d14mit3222222222222222-12
14d14rat21222222222222222212
14d14rat94222222222222222212
15d15mit2222222222222222-12
15d15rat1322222-222222222212
15d15mgh522222222222222221-
15d15rat2922222222222222221-
16d16rat21222222222222222212
16d16rat8222222222222222212
16d16rat72222222222222222212
17d17rat53222222222222222212
17d17rat11222222222222222212
17d17rat36222222222222222212
17d17rat52222222222222222212
18d18rat85111111111111111112
18d18rat27111111111111111112
18d18mit131111111-11111111-2
19d19rat32213223333313333312
19d19rat252222222222-2222212
19d19mit2213223333313333312
19d19rat60322222222233332312
20d20mgh1222222222222222212
20d20mgh5222222222222222212
20d20rat1222222222222222212
20d20rat10222222222222222212