Strain & Genotype Data Description


SS-16BN/Mcwi

Genetic characteristics of the SS-16BN/Mcwi consomic strains studied.
Presented are the data from a total genome scan performed at a 20 cM interval. Chromosomes are shown in the first column. Genetic marker used are shown in the second column. The last 3 columns display control DNAs from parental rats. Other columns display the results for pooled DNAs from 2 progenitors of the animals used by the Phenotyping Core.
Table Legend:
BN: parental control DNA
SS: parental control DNA
HET: F1 Heterozygous DNA (from female)
1: Genotyping score given to BN homozygous markers
2: Genotyping score given to SS homozygous markers
3: Genotyping score given to heterozygous markers
-: Genotype missing

CHR

MARKER NAME

SSM1737+SSF0870

SSM1737+SSF0857

SSM1738+SSF0858

SSM1543+SSF0769

SSM1543+SSF0771

SSM1661+SSF0773

SSM1661+SSF0776

SSM1728+SSF0847

SSM1659+SSF0777

SSM1658+SSF0770

SSM1658+SSF0775

SSM1660+SSF0774

BN

SS

HET

1d1rat167222222222222123
1d1rat136222222222222123
1d1rat265222222222222123
1d1rat183222222222222123
1d1rat139222222222222123
1d1rat295222222222222123
1d1rat301222222222222123
1d1rat90222222222222123
2d2rat187222222222222123
2d2rat194---------------
2d2rat202222222222222123
2d2rat276222222222222123
2d2rat218222222222222123
2d2rat40222222222222123
2d2mgh12222222222222123
2d2rat139222222222222123
2d2rat72222222222222123
3d3mgh8222222222222123
3d3rat227222222222222123
3d3rat168222222222222123
3d3rat17222222222222123
3d3rat6222222222222123
3d3rat142222222222222123
3d3rat77222222222222123
4d4rat2222222222222123
4d4rat126222222222222123
4d4rat157222222222222123
4d4rat169222222222222123
4d4rat106222222222222123
4d4rat200222222222222123
4d4rat70222222222222123
5d5rat116222222222222123
5d5rat2222222222222123
5d5mgh6222222222222123
5d5rat26222222222222123
5d5rat103222222222222123
5d5rat246222222222222123
6d6rat90222222222222123
6d6mgh4222222222222123
6d6rat26222222222222123
6d6rat42222222222222123
6d6rat46222222222222123
7d7rat36222222222222123
7d7rat32222222222222123
7d7rat27222222222222123
7d7rat73222222222222123
7d7rat133222222222222123
7d7rat80222222222222123
8d8rat51222222222222123
8d8rat23222222222222123
8d8rat14222222222222123
8d8rat2222222222222123
9d9rat1222222222222123
9d9rat112222222222222123
9d9rat26222222222222123
9d9rat130222222222222123
9d9rat101222222222222123
10d10rat9622-2-2222222123
10d10rat40222222222222123
10d10rat131222222222222123
10d10rat17---------------
10d10rat2222222222222123
11d11rat22222222222222123
11d11rat71222222222222123
11d11rat61222222222222123
11d11rat43222222222222123
12d12rat8922222-222222123
12d12mit2222222222222123
12d12rat22222222222222123
13d13mit42222222-2222123
13d13rat91222222222222123
13d13rat4222222222222123
14d14rat1222222222222123
14d14rat83222222222222123
14d14rat90222222222222123
14d14rat95222222222222123
15d15rat106222222222222123
15d15rat22222222222222123
15d15rat81222222222222123
15d15rat114222222222222123
16d16rat87111111111111123
16d16rat67111111111111123
16d16rat37111111111111123
17d17rat53222222222222123
17d17rat16222222222222123
17d17rat36222222222222123
17d17rat52222222222222123
18d18rat822-2-22222222123
18d18rat91222222222222123
18d18rat2422-22-222222123
18d18rat113222222222222123
19d19rat86222222222222123
19d19rat48222222222222123
19d19rat58222222222222123
20d20uw122-222-2-2-2123
20d20rat512222--222222123
20d20mit12222-2222222123
21dxrat104222222222222123
21dxrat51---------------
21dxrat3222222222222123