Strain & Genotype Data Description


SS-12BN/Mcwi

Genetic characteristics of the SS-12BN consomic strains studied.
Presented are the data from a total genome scan performed at a 20 cM interval. Genetic markers used are shown in the first column. The last columns display SS, and BN control DNA. Other columns display the results for DNA from individual progenitors of the animals phenotyped and sent to CRL for distribution.
Table Legend:
BN: parental control DNA
SS: parental control DNA
HET: F1 Heterozygous DNA (from female)
1: Genotyping score given to BN homozygous markers
2: Genotyping score given to SS homozygous markers
3: Genotyping score given to heterozygous markers
-: Genotype missing

CHR

MARKER NAME

16466_1

16466_2

16466_3

22399_1

22399_3

22399_4

22399_7

22514_2

22514_5

22514_11

BN

SS

1d1rat167222222222212
1d1rat234222222222212
1d1rat265222222222212
1d1rat47222222222212
1d1rat73222222222212
1d1rat89222222222212
2d2rat114222222222212
2d2rat14222222222212
2d2rat20222222222212
2d2mit35222222222212
2d2rat149222222222212
2d2rat65222222222212
3d3mgh82222222--212
3d3rat189222222222212
3d3rat86222222222212
3d3rat217222222222212
3d3rat1222222222212
4d4rat2222222222212
4d4rat142222222---12
4d4rat75222222222212
4d4rat56222222222212
4d4rat112222222222212
5d5mgh1222222222212
5d5rat84222222222212
5d5rat88222222222212
5d5mit5222222222212
5d5rat33222222222212
5d5rat50222222222212
6d6rat67222222222212
6d6rat96222222222212
6d6rat134222222222212
6d6rat98222222222212
6d6mgh9222222222212
6d6rat75222222222212
7d7rat113222222222212
7d7rat83222222222212
7d7rat14222222222212
7d7rat94222222222212
8d8rat56222222222212
8d8mit2222222222212
8d8rat3022222--22212
8d8rat81222222222212
9d9rat88222222222212
9d9rat30222222222212
9d9rat9822222--22212
9d9rat4222222222212
9d9rat108222222222212
10d10rat96222222222212
10d10rat73222222222212
10d10rat107222222222212
10d10mgh4222222222212
10d10rat105222222222212
11d11rat32222222222212
11d11rat34222222222212
11d11rat76222222222212
11d11rat22222222222212
12d12arb13111111111112
12d12rat9111111111112
12d12rat79111111111112
12d12rat49111111111112
13d13mgh13-------222--
13d13rat88222222222212
13d13rat332222222---12
13d13rat192222222222212
14d14rat24222222222212
14d14rat10222222222212
14d14rat212222222---12
14d14rat94222222222212
15d15mit2222222222212
15d15rat13222222222212
15d15mgh5222222222212
15d15rat29222222222212
16d16rat21222222222212
16d16rat8222222222212
16d16rat72222222222212
16d16rat14222222222212
17d17rat53222222222212
17d17rat11---222222212
17d17rat36222222222212
17d17rat52222222222212
18d18rat17222222222212
18d18rat50222222222212
18d18rat101222222222212
18d18mit13222222222212
19d19rat32222222222212
19d19rat35222222222212
19d19mit2222222222212
19d19rat60222222222212
20d20rat1222222222212
20d20mgh5222222222212
20d20rat10222222222212
20d20mgh1222222222212
21dxrat49222222222212
21dxmgh8222222222212
21dxrat66222222222212
21dxrat104222222222212