Strain & Genotype Data Description


SS-11BN/Mcwi

Genetic characteristics of the SS-11BN/Mcwi consomic strain studied.
Presented are the data from a total genome scan performed at a 20 cM interval. Chromosomes are shown in the first column. Genetic markers used are shown in the second column. The last column displays control DNA from het rats. Other columns display the results for DNA from individual progenitors of the animals phenotyped and sent to CRL for distribution.
Table Legend:
BN: parental control DNA
SS: parental control DNA
HET: F1 Heterozygous DNA (from female)
1: Genotyping score given to BN homozygous markers
2: Genotyping score given to SS homozygous markers
3: Genotyping score given to heterozygous markers
-: Genotype missing

CHR

MARKER NAME

11676_1

11676_2

11676_3

11676_4

11676_5

11676_6

9686_1

9686_10

9686_11

9686_2

9686_3

9686_4

9686_5

9686_6

9686_7

9686_8

9686_9

12906_4

BN

SS

SS_HET

1d1rat167222222222222222222123
1d1rat234222222222222222222123
1d1rat265222222222222222222123
1d1rat47222222222222222222123
1d1rat73222222222222222222123
1d1rat89222222222222222222123
2d2rat114222222222222222222123
2d2rat14222222222222222222123
2d2rat20222222222222222222123
2d2mit35222222222222222222123
2d2rat149222222222222222222123
2d2rat65222222222222222222123
3d3mgh8222222222222222222123
3d3rat189222222222222222222123
3d3rat86222222222222222222123
3d3rat217222222222222222222123
3d3rat1222222222222222222123
4d4rat2222222222222222222123
4d4rat14222222222222222222123
4d4rat75222222222222222222123
4d4rat56222222222222222222-23
4d4rat112222222222222222222123
5d5mgh1222222222222222222-23
5d5rat84222222222222222222123
5d5rat88222222222222222222123
5d5mit5222222222222222222123
5d5rat33222222222222222222123
5d5rat50222222222222222222123
6d6rat67222222222222222222123
6d6rat962222222222222222221-3
6d6rat134222222222222222222-23
6d6rat98222222222222222222123
6d6mgh9222222222222222222123
6d6rat75222222222222222222123
7d7rat113222222222222222222123
7d7rat832222222222222222221-3
7d7rat14222222222222222222-23
7d7rat94222222222222222222123
8d8rat562222222222222222221-3
8d8mit2222222222222222222-23
8d8rat30222222222222222222123
8d8rat81222222222222222222123
9d9rat88---222---222------1--
9d9rat30222222222222222222123
9d9rat98222222222222222222123
9d9rat5------22222222222212-
9d9rat108222222222222222222123
10d10rat96222222222222222222123
10d10rat73222222222222222222123
10d10rat107222222222222222222123
10d10mgh4222---222222222222123
10d10rat135222------2222222221-3
11d11rat32111111111111111111123
11d11rat34111111111111111---123
11d11rat76111111111111111111-23
11d11rat22111111111111111111123
12d12arb13222222222---222222123
12d12rat92222222222222222221--
12d12rat79---222---222---------
12d12rat49222222222222222222123
13d13mgh132222222222222222221-3
13d13rat88222222222222222222123
13d13rat332222222222222222221-3
13d13rat192222222222222222222123
14d14rat48222222222222222222123
14d14rat21222---222222222222123
14d14rat94222222222222222222123
14d14rat10222222222222222222123
15d15mit2---------------------
15d15rat13---------------------
15d15mgh5222222222222222222123
15d15rat29222---------222222-2-
16d16rat21222222222222222222123
16d16rat8222222222222222222123
16d16rat72222222222222222222123
16d16rat14222222222222222222123
17d17rat53222222222222222222123
17d17rat11222222222222222222123
17d17rat36222222222222222222123
17d17rat52222222222222222222123
18d18rat17222222222222222222123
18d18rat50222222222222222222123
18d18rat101222222222222222222123
18d18mit13---222222222222222123
19d19rat32222222222222222222123
19d19rat25222222222222222222123
19d19mit2222222222222222222123
19d19rat602222222222222222221-3
20d20rat46222222222222222222123
20d20mgh5222222---------------
20d20rat10---222222222222222123
20d20mgh1222222---------------
21dxrat49222222222222222222121
21dxmgh8222222222222222222121
21dxrat66222222222222222222121
21dxrat104222222222222222222121