Strain & Genotype Data Description


SS-10BN/Mcwi

Genetic characteristics of the SS-10BN consomic strains studied.
Presented are the data from a total genome scan performed at a 20 cM interval. Chromosomes are shown in the first column. Genetic markers used are shown in the second column. The last column displays control DNA from het rats. Other columns display the results for DNA from individual progenitors of the animals phenotyped and sent to CRL for distribution.
Table Legend:
BN: parental control DNA
SS: parental control DNA
HET: F1 Heterozygous DNA (from female)
1: Genotyping score given to BN homozygous markers
2: Genotyping score given to SS homozygous markers
3: Genotyping score given to heterozygous markers
-: Genotype missing

CHR

MARKER NAME

14765_1

14765_2

14765_3

14765_4

14765_5

14765_6

14765_7

14765_8

14765_9

14765_10

14765_11

15357_8

14764_2

14764_9

14764_11

14764_12

14764_13

BN

SS

SS_HET

1d1rat16722222222---222222123
1d1rat23422222222222222222-2-
1d1rat26522222222222222222123
1d1rat4722222222222222222123
1d1rat7322222222222222222123
1d1rat8922222222222222222123
2d2rat11422222222222222222123
2d2rat1422222222222222222123
2d2rat2022222222222222222123
2d2mit3522222222222222222123
2d2rat14922222222222222222123
2d2rat6522222222222222222123
3d3mgh822222222222222222123
3d3rat18922222222222222222123
3d3rat8622222222222222222123
3d3rat21722222222222222222123
3d3rat122222222222222222123
4d4rat222222222222222222123
4d4rat1422--222222222222212-
4d4rat75222222222222-2222123
4d4rat56--222222222222222-2-
4d4rat112--222222222222222-23
5d5mgh1--222222222222222123
5d5rat8422--2222222222222123
5d5rat8822222222222222222123
5d5mit522222222222222222123
5d5rat332222222222222222212-
5d5rat5022222222222222222123
6d6rat6722222222222222222123
6d6rat9622--2222222222222123
6d6rat13422222222222222222123
6d6rat98--222222222222222123
6d6mgh922----2222222222212-
6d6rat7522222222222222222123
7d7rat11322--2222222222222123
7d7rat8322222222222222222123
7d7rat1422--222222222222212-
7d7rat9422222222222222222123
8d8rat5622222222222222222-23
8d8mit2222222222222-2222123
8d8rat3022222222222222222123
8d8rat8122222222222222222--3
9d9rat88222222222222-----12-
9d9rat3022222222222222222123
9d9rat98--222222222222222-2-
9d9rat522222222222222222123
9d9rat10822222222222222222123
10d10rat96222222222222-2222--3
10d10rat7311111111111111111123
10d10rat10711111111111111111123
10d10mgh411111111111111111123
10d10rat10511111111111111111123
11d11rat3222222222222222222123
11d11rat3422222222222222222123
11d11rat762222222222222222212-
11d11rat2222222222222222222123
12d12arb132222--22222222222-2-
12d12rat9222222222222-------3
12d12rat7922222222222222222123
12d12rat4922222222222222222123
13d13mgh1322222222222222222123
13d13rat8822222222222222222123
13d13rat3322222222222222222123
13d13rat19222222222222222222123
14d14rat2422222222222222222123
14d14rat212222----22222222212-
14d14rat9422222222222222--2---
14d14rat1022---------222222123
15d15mit222222222222222222-2-
15d15rat13------------2222212-
15d15mgh522222222222222222123
15d15rat2922222222222222--2-2-
16d16rat2122222222222222222-23
16d16rat8222222222222-2222-23
16d16rat7222222222222222222-23
16d16rat1422222222222222222123
17d17rat53--22----22222-222-23
17d17rat1122222222222222222123
17d17rat3622222222222222222123
17d17rat522222222222222222--23
18d18rat1722222222222222222-2-
18d18rat502222222222222222---3
18d18rat10122222222222222222123
18d18mit13222222222222-222--23
19d19rat322222222222222222-123
19d19rat2522222222222222222123
19d19mit222222222222222222123
19d19rat602222222222222-----23
20d20rat4622222222222222222123
20d20mgh522222222222222222123
20d20rat102222222222222222212-
20d20mgh1------------22222---
21dxrat4922222222222222222121
21dxmgh822222222222222222121
21dxrat662222--2222222-222---
21dxrat10422222222222222222121