Strain & Genotype Data Description


SS

Genetic characteristics of the SS consomic strains studied.
Presented are the data from a total genome scan performed at a 20 cM interval. Chromosomes are shown in the first column. Genetic marker used are shown in the second column. The last 2 columns display control DNAs from parental rats. Other columns display the results for pooled DNAs from individual or pooled of the animals used by the Phenotyping Core and sent to CRL for distribution.
Table Legend:
BN: parental control DNA
SS: parental control DNA
HET: F1 Heterozygous DNA (from female)
1: Genotyping score given to BN homozygous markers
2: Genotyping score given to SS homozygous markers
3: Genotyping score given to heterozygous markers
-: Genotype missing

CHR

MARKER NAME

10089

9949+10082

10090

10091

10092

10097

10098

10099

10046+45

10100

10047+9950

SS

BN

1d1rat1672222222222221
1d1rat2342222222222221
1d1rat2652222222222221
1d1rat472222222222221
1d1rat732222222222221
1d1rat892222222222221
2d2rat1142222222222221
2d2rat142222222222221
2d2mit352222222222221
2d2rat1492222222222221
2d2rat652222222222221
3d3mgh82222222222221
3d3rat522222222222221
3d3rat1892222222222221
3d3rat862222222222221
3d3rat2172222222222221
3d3rat12222222222221
4d4rat22222222222221
4d4rat14222222222222-
4d4rat752222222222221
4d4rat70------------1
4d4rat1122222222222-21
5d5mgh12222222222221
5d5mit5222222222222-
5d5rat842222222222221
5d5rat162222222222221
5d5rat882222222222222
5d5rat332222222222223
5d5rat502222222222221
6d6rat672222222222221
6d6rat962222222222221
6d6rat982222222222221
6d6mgh92222222222221
6d6rat752222222222221
7d7rat1132222222222222
7d7rat832222222222222
7d7rat142222222222222
7d7rat942222222222222
8d8rat562222222222221
8d8mit22222222222221
8d8rat302222222222221
8d8rat7222222222222-1
9d9rat882222222222221
9d9rat302222222222221
9d9rat9822222-2222221
9d9rat52222222222221
9d9rat1082222222222221
10d10rat962222222222221
10d10rat1132222222222221
10d10rat732222222222221
10d10rat1072222222222221
10d10mgh42-2--2-22222-
10d10rat135-22222--2222-
11d11rat3222-22222-2221
11d11mit422-22222-2221
11d11rat762222222222221
11d11rat222222222222221
12d12arb13222222222222-
12d12rat92222222222221
12d12rat492222222222221
13d13mgh13222222-22-221
13d13rat882222222222221
13d13rat332222222222221
13d13rat1922222222222221
14d14rat212222222222221
14d14rat12222222222221
14d14mit32222222222221
14d14rat942222222222221
15d15mit22222222222221
15d15rat132222222222221
15d15mgh522222222222-1
15d15rat292222222222221
16d16rat212222222222221
16d16rat82222222222221
16d16rat72222222222-2-1
16d16rat14222222222-221
17d17rat53222222222-221
17d17rat112222222222221
17d17rat362222222222221
17d17rat522222222222221
18d18rat17222222222-22-
18d18mgh22--2---2-----
18d18rat272222222222221
18d18mit13222222222222-
19d19rat322222222222221
19d19rat25222222222222-
19d19mit22222222222221
19d19rat602222222222221
20d20rat12222222222221
20d20mgh52222222222221
20d20rat102222222222221
20d20mgh12222222222221
21dxrat4922222-2222221
21dxmgh82222222222221
21dxrat8822222222222--
21dxrat1042222222222-21